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ALISSA: an automated live-cell imaging system for signal transduction analyses

Wenus, Jakub and Düssmann, Heiko and Paul, Perrine and Kalamatianos, Dimitrios and Rehm, Markus and Wellstead, Peter E. and Prehn, Jochen H.M. and Huber, Heinrich J. (2009) ALISSA: an automated live-cell imaging system for signal transduction analyses. BioTechniques, 47 (6). pp. 1033-1040. ISSN 0736-6205

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Abstract

Probe photobleaching and a specimen’s sensitivity to phototoxicity severely limit the number of possible excitation cycles in time-lapse fluorescent microscopy experiments. Consequently, when a study of cellular processes requires measurements over hours or days, temporal resolution is limited, and spontaneous or rapid events may be missed, thus limiting conclusions about transduction events. We have developed ALISSA, a design framework and reference implementation for an automated live-cell imaging system for signal transduction analysis. It allows an adaptation of image modalities and laser resources tailored to the biological process, and thereby extends temporal resolution from minutes to seconds. The system employs online image analysis to detect cellular events that are then used to exercise microscope control. It consists of a reusable image analysis software for cell segmentation, tracking, and time series extraction, and a measurement-specific process control software that can be easily adapted to various biological settings. We have applied the ALISSA framework to the analysis of apoptosis as a demonstration case for slow onset and rapid execution signaling. The demonstration provides a clear proof-of-concept for ALISSA, and offers guidelines for its application in a broad spectrum of signal transduction studies.

Item Type: Article
Additional Information: The definitive version of this article is available at BioTechniques, Vol. 47, No. 6, December (2009) pp. 1033–1040. Supplementary material for this article is available at www.BioTechniques.com/article/113247.
Keywords: ALISSA; signal transduction analyses; automated microscopy; live cell imaging; image analysis; online event detection; apoptosis; software engineering;
Subjects: Science & Engineering > Hamilton Institute
Item ID: 3742
Depositing User: Dimitris Kalamatianos
Date Deposited: 06 Jun 2012 15:10
Journal or Publication Title: BioTechniques
Publisher: Eaton Publishing
Refereed: Yes
URI:

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