Kelly, D.P. and Hennelly, B.M. and McElhinney, C. and Naughton, T.J. (2008) A Practical Guide to Digital Holography and Generalized Sampling. Proceedings of SPIE, 7072 . 707215.1-707215.11. ISSN 0277-786X

Keane, T.M. and Page, A.J. and Naughton, T.J. and Travers, S.A.A. and McInerney, J.O. (2005) Building large phylogenetic trees on coarse-grained parallel machines. Algorithmica .

Keane, T.M. and Naughton, T.J. and Travers, S.A.A. and McInerney, J.O. and McCormack, G.P. (2005) DPRml: distributed phylogeny reconstruction by maximum likelihood. Bioinformatics, 21 (7). pp. 969-974.

Keane, T.M. and Naughton, T.J. and Travers, S.A.A. and McInerney, J.O. and McCormack, G.P. (2005) DPRml: Distributed Phylogeny Reconstruction by Maximum Likelihood. Bioinformatics, 21 . pp. 969-974.

Keane, T.M. and Naughton, T.J. (2005) DSEARCH: sensitive database searching using distributed computing. Bioinformatics, 21 . pp. 1705-1706.

Darakis, E. and Kempkes, M. and Khanam, T. and Rajendran, A. and Kariwala, V. and Naughton, T.J. and Mazzotti, M. and Asundi, A.K. (2009) Localization of Microfibers within Volumes Using Digital Holographic Video. In: DTuB6, 26-30 April 2009, Vancouver, Canada.

Näsänen, R. and Metso, A. and Lehtimäki, T.M. and Naughton, T.J. (2009) Perceptual quality of reconstructions of digital holograms: extending depth of focus by binocular fusion. In: European Conference on Visual Perception, August 24th - 28th 2009, Regensburg, Germany .

McElhinney, C. and Hennelly, B.M. and Ahrenberg, L. and Naughton, T.J. (2008) Removing the twin image in digital holography by segmented filtering of in-focus twin image. Optics & Photonics for Information Processing, 7072 . pp. 707208-1.