Madsen, Declan and Cantwell, Emma R. and O'Brien, Timothy and Johnson, Patricia A. and Mahon, Bernard P. (2009) Adeno-associated virus serotype 2 induces cell-mediated immune responses directed against multiple epitopes of the capsid protein VP1. Journal of General Virology, 90 (11). pp. 2622-2633. ISSN 1465-2099

Krippendorff, Ben-Fillippo and Neuhaus, Roland and Lienau, Philip and Reichel, Andreas and Huisinga, Wilhelm (2009) Mechanism-based Inhibition: Deriving KI and kinact directly from Time-Dependent IC50 Values. Journal of Biomedical Screening, 14 (8). pp. 913-923. ISSN 1087-0571

Duffy, Ken R. and Subramanian, Vijay G. (2009) On the impact of correlation between collaterally consanguineous cells on lymphocyte population dynamics. Journal of Mathematical Biology, 59 (2). pp. 255-285. ISSN 1432-1416

Pearlmutter, Barak A. and Conor J. Houghton, Conor J. (2009) A New Hypothesis for Sleep: Tuning for Criticality. Neural Computation, 21 (6). pp. 1622-1641. ISSN 1530-888X

Krippendorff, Ben-Fillippo and Kuester, Katharina and Kloft, Charlotte and Huisinga, Wilhelm (2009) Nonlinear pharmacokinetics of therapeutic proteins resulting from receptor mediated endocytosis. Journal of Pharmacokinetics and Pharmacodynamics , 36 (3). pp. 239-260. ISSN 1567-567X

Ennis, Darragh (2009) Behavioural interactions between the large pine weevil, Hylobius abietis L.(Coleoptera: Curculionidae), and entomopathogenic nematodes. PhD thesis, National University of Ireland Maynooth.

English, K. and Ryan, J.M. and Tobin, L. and Murphy, M.J. and Barry, F.P. and Mahon, B.P. (2009) Cell contact, prostaglandin E2 and transforming growth factor beta 1 play non-redundant roles in human mesenchymal stem cell induction of CD4+CD25High forkhead box P3+ regulatory T cells. Clinical and Experimental Immunology, 156 . pp. 149-160.

von Kleist, Max and Huisinga, Wilhelm (2009) Pharmacokinetic-Pharmacodynamic relationship of NRTIs and its connection to viral escape: An example based on Zidovudine. European Journal of Pharmaceutical Sciences, 36 (4-5). pp. 535-543. ISSN 0928-0987

Fitzpatrick, David A. and Logue, Mary E. and Butler, Geraldine (2008) Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis. BMC Evolutionary Biology, 8 . pp. 181-195. ISSN 1471-2148

Subramanian, Vijay G. and Duffy, Ken R. and Turner, Marian L. and Hodgkin, Philip D. (2008) Determining the expected variability of immune responses using the Cyton Model. Journal of Mathematical Biology, 56 (6). pp. 861-892. ISSN 1432-1416

Ferreira, Jorge and Middleton, Rick (2008) An in-silico analysis of the SMART study of HIV infection. IFAC Symposia Series .

Ferreira, Jorge and Middleton, Rick (2008) An in-silico analysis of the SMART study of HIV infection. In: 7th IFAC Symposium on Modelling and Control, November 2008.

Mowlds, Peter and Kavanagh, Kevin (2008) Effect of pre-incubation temperature on susceptibility of Galleria mellonella larvae to infection by Candida albicans. Mycopathologia, 165 . pp. 5-12.

English, Karen and Barry, Frank P. and Mahon, Bernard P. (2008) Murine mesenchymal stem cells suppress dendritic cell migration, maturation and antigen presentation. Immunology Letters, 115 . pp. 50-58.

von Kleist, Max and Huisinga, Wilhelm (2007) Physiologically Based Pharmacokinetic Modelling: A Sub-Compartmentalized Model of Tissue Distribution. Journal of Pharmacokinetics and Pharmacodynamics, 34 (6). pp. 789-806. ISSN 1573-8744

Rüdiger, S. and Shuai, J.W. and Huisinga, W. and Nagaiah, Ch. and Warnecke, G. and Parker, I. and Falcke, M. (2007) Hybrid stochastic and deterministic simulations of calcium blips. Biophysical Journal, 93 (6). pp. 1847-1857. ISSN 0006-3495

Verwoerd, Mark and Mason, Oliver (2007) Conditions for the existence of fixed points in a finite system of Kuramoto oscillators. In: Proceedings of the 2007 American Control Conference, Marriott Marquis Hotel at Times Square, New York City, USA, July 11-13, 2007. IEEE, pp. 4613-4618. ISBN 1-4244-0988-8

Keane, Thomas M. and Naughton, Thomas J. and McInerney, James O. (2007) MultiPhyl: a high-throughput phylogenomics webserver using distributed computing. Nucleic Acids Research, 35 (Web Server Issue). W33-W37. ISSN 0305-1048

Stack, Deirdre and Neville, Claire and Doyle, Sean (2007) Nonribosomal peptide synthesis in Aspergillus fumigatus and other fungi. Microbiology, 153 (5). pp. 1297-1306. ISSN 1465-2080

Barillot, C. and Coupé, P. and El Ganaoui, O. and Gibaud, B and Hellier, P. and Jannin, P. and Paul, P. and Prima, S. and Wiest-Daesslé, N. and Morandi, X. (2007) Image guidance in neurosurgical procedures, the "Visages" point of view. In: 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Proceedings. IEEE, pp. 1056-1059. ISBN 1-4244-0672-2

Mason, Oliver and Verwoerd, Mark (2007) Graph Theory and Networks in Biology. IET Systems Biology, 1 (2). pp. 89-119. ISSN 1751-8857

Ryan, J.M. and Barry, F. and Murphy, J.M. and Mahon, B.P. (2007) Interferon-y does not break, but promotes the immunosuppressive capacity of adult human mesenchymal stem cells. Clinical and Experimental Immunology, 149 . pp. 353-363.

Thati, Bhumika and Noble, Andy and Rowan, Raymond and Creaven, Bernadette S. and Walsh, Maureen and McCann, Malachy and Egan, Denise (2007) Mechanism of action of coumarin and silver(I)- coumarin complexes against the pathogenic yeast Candida albicans. Toxicology in Vitro .

Lacey, N. and Delaney, S. and Kavanagh, K. and Powell, F.C. (2007) Mite-related bacterial antigens stimulate inflammatory cells in rosacea. British Journal of Dermatology .

Lacey, N and Delaney, S and Kavanagh, K and Powell, F. C. (2007) Mite-related bacterial antigens stimulate inflammatory cells in rosacea. British Journal of Dermatology, 157 . pp. 474-481.

Fitzpatrick, David A. and Logue, Mary E. and Stajich, Jason E. and Butler, Geraldine (2006) A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. BMC Evolutionary Biology, 6 . pp. 99-113. ISSN 1471-2148

Creaven, Bernadette and Egan, Denise and Kavanagh, Kevin and McCann, Malachy and Noble, Andy and Thati, Bhumika and Walsh, Maureen (2006) Synthesis, characterization and antimicrobial activity of a series of substituted coumarin-3-carboxylatosilver(1) complexes. Inorganica Chimica Acta, 359 (12). pp. 3976-3984.

Streif, Stefan and Findeisen, Rolf and Bullinger, Eric (2006) Relating cross Gramians and sensitivity analysis in systems biology. In: Proceedings of the 17th International Symposium on Mathematical Theory of Networks and Systems (MTNS 2006), July 24-28, 2006, Kyoto International Conference Hall, Kyoto, Japan.

Fitzpatrick, David A. and O'Halloran, Damien M. and Burnell, Ann M. (2006) Multiple lineage specific expansions within the guanylyl cyclase gene family. BMC Evolutionary Biology, 6 . pp. 26-43. ISSN 1471-2148

Zachariadis, O. and Cassidy, J. P. and Brady, J. and Mahon, B. P. (2006) T Cells Regulate the Early Inflammatory Response to Bordetella pertussis Infection in the Murine Respiratory Tract. Infection and Immunity, 74 . pp. 1837-1845.

Doherty, Derek and Arnaiz, Blanca and Madrigal-Estebas, Laura and Todryk, Stephen and James, Tharappel C and Bond, Ursula (2006) A novel method to identify and characterise peptide mimotopes of heat shock protein 70-associated antigens. Journal of Immune Based Therapies and Vaccines, 4 (2). pp. 1-12.

Kelly-Rogers, Jane and Madrigal-Estebas, Laura and O'Connor, Tony and Doherty, Derek G. (2006) Activation-Induced Expression of CD56 by T Cells Is Associated With a Reprogramming of Cytolytic Activity and Cytokine Secretion Profile In Vitro. Human Immunology, 67 . pp. 863-873.

Carberry, Stephen and Neville, Claire M. and Kavanagh, Kevin A. and Doyle, Sean (2006) Analysis of major intracellular proteins of Aspergillus fumigatus by MALDI mass spectrometry: Identification and characterisation of an elongation factor 1B protein with glutathione transferase activity. Biochemical and Biophysical Research Communications, 341 . pp. 1096-1104.

Keane, Thomas and Creevey, Christopher and Pentony, Melissa and Naughton, Thomas and McInerney, James (2006) Assessement of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evolutionary Biology, 6 . pp. 29-46.

Lewis, Edwin E. and Campbell, James and Griffin, Christine and Kaya, Harry and Peters, Arne (2006) Behavioral ecology of entomopathogenic nematodes. Biological Control, 38 . pp. 66-79.

Keane, Thomas and Page, Andrew and Naughton, Thomas and Travers, Simon and McInerney, James (2006) Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines. Algorithmica, 45 (3). pp. 285-300.

Reeves, Emer and Nagl, Markus and O'Keeffe, Joseph and Kelly, Judy and Kavanagh, Kevin (2006) Effect of N-chorotaurine on Aspergillus, with particular reference to destruction of secreted gliotoxin. Journal of Medical Microbiology, 55 . pp. 913-918.

Corcoran, A. and Crowley, B. and Dewhurst, C. and Pizer, B.L. and Doyle, S. (2006) Establishment of Functional B Cell Memory Against Parvovirus B19 Capsid Proteins May be Associated With Resolution of Persistent Infection. Journal of Medical Virology, 78 . pp. 125-128.

Fitzpatrick, David A. and Creevey, Christopher J. and McInerney, James O. (2006) Genome Phylogenies Indicate a Meaningful a-Proteobacterial Phylogeny and Support a Grouping of the Mitochondria with the Rickettsiales. Molecular Biology and Evolution, 23 (1). pp. 74-85.

Corcoran, A. and Doyle, Sean (2006) Human Parvovirus B19: Molecular Virology, Clinical Features, Prevalence, Diagnosis and Control. In: UNSPECIFIED Elsevier, pp. 173-209.

English, Karen and Brady, Claire and Corcoran, Paul and Cassidy, Joseph P. and Mahon, Bernard P. (2006) Inflammation of the respiratory tract is associated with CCL28 and CCR10 expression in a murine model of allergic asthma. Physiology and Behavior, 87 . pp. 842-847.

Harvey, Deirdre and Smith, Roisin and English, Karen and Mahon, Bernard and Commins, Sean (2006) Interleukin-10 (IL-10) but not Lipopolysaccharide (LPS) produces increased motor activity and abnormal exploratory patterns while impairing spatial learning in Balb/c mice. Immunology Letters, 103 . pp. 92-100.

Pisani, Davide and Mohun, Samantha and Harris, Simon and McInerney, James and Wilkinson, Mark (2006) Molecular evidence for dim-light vision in the last common ancestor of the vertebrates. Current Biology, 16 (9). pp. 318-319.

McInerney, James (2006) On the desirability of models for inferring genome phylogenies. Trends in Microbiology, 14 (1). pp. 1-2.

Bergin, David and Murphy, Lisa and Keenan, Joanne and Clynes, Martin and Kavanagh, Kevin (2006) Pre-exposure to yeast protects larvae of Galleria mellonella from a subsequent lethal infection by Candida albicans and is mediated by the increased expression of antimicrobial peptides. Microbes and Infection .

Farina, Marcello and Findeisen, Rolf and Bullinger, Eric and Bittanti, Sergio and Allgöwer, Frank and Wellstead, Peter (2006) Results Towards Identifiability Properties of Biochemical Reaction Networks. In: 45th IEEE Conference on Decision & Control Manchester Grand Hyatt Hotel San Diego, CA, USA, December 13-15, 2006. IEEE, pp. 2104-2109. ISBN 1-4244-0171-2

Eissing, Thomas and Waldherr, Steffen and Gondro, Cedric and Bullinger, Eric and Sawodny, Oliver and Allgöwer, Frank and Scheurich, Peter and Sauter, Thomas (2006) Sensitivity analysis of programmed cell death and implications for crosstalk phenomena during Tumor Necrosis Factor stimulation. In: Proceedings of the 2006 IEEE International Conference on Control Applications Munich, Germany, October 4-6, 2006. IEEE, pp. 1746-1752. ISBN 0-7803-9797-5

Telgmann, Regina and von Kleist, Max and Huisinga, Wilhelm (2006) Software supported modelling in pharmacokinetics. In: Computational Life Sciences II: Second International Symposium, CompLife 2006, Cambridge, UK, September 27-29, 2006. Proceedings. Lecture Notes in Computer Science (LNCS), 4216/2006 . Springer Berlin / Heidelberg, pp. 216-225. ISBN 978-3-540-45767-1

Dillon, Aoife B. and Ward, Declan and Downes, Martin J. and Griffin, Christine T. (2006) Suppression of the large pine weevil Hylobius abietis (L.) (Coleoptera: Curculionidae) in pine stumps by entomopathogenic nematodes with different foraging strategies. Biological Control, 38 . pp. 217-226.

Fitters, Paul F.L. and Griffin, Christine T. (2006) Survival, starvation, and activity in Heterorhabditis megidis (Nematoda: Heterorhabditidae). Biological Control, 37 . pp. 82-88.

Renwick, Julie and Daly, Paul and Reeves, Emer and Kavanagh, Kevin (2006) Susceptibility of Larvae of Galleria mellonella to Infection by Asperillus fumigatus is Dependent upon Stage of Conidial Germination. Mycopathologia, 161 . pp. 377-384.

Creaven, Bernadette S. and Egan, Denise A. and Kavanagh, Kevin and McCann, Malachy and Noble, Andy and Thati, Bhumika and Walsh, Maureen (2006) Synthesis, characterization and antimicrobial activity of a series of substituted coumarin-3-carboxylatosilver(I) complexes. Inorganica Chimica Acta .

McInerney, James O. (2006) The causes of protein evolutionary rate variation. Trends in Ecology and Evolution, 21 (5). pp. 230-232.

Doyle, Sean and Corcoran, Amanda (2006) The Immune Response to Parvovirus B19 Exposure in previously Seronegative and Seropositive Individuals. The Journal of Infectious Diseases, 194 . pp. 154-158.

Lian, Hui-Yong and Jiang, Yi and Zhang, Hong and Jones, Gary and Perrett, Sarah (2006) The yeast prion protein Ure2: Structure, function and folding. Biochimica et Biophysica Acta - Proteins and Proteomics, 1764 (3). pp. 535-545.

Renwick, Julie and Reeves, Emer P. and Wientjes, Frans B. and Kavanagh, Kevin (2006) Translocation of proteins homologous to human neutrophil p47phox and p67phox to the cell membrane in activated hemocytes of Galleria mellonella. Developmental and Comparative Immunology .

Dix, Philip J. and Burbridge, E. and Diamond, M. and McCabe, P.F. (2006) Use of cell morphology to evaluate the effect of a peroxidase gene on cell death induction thresholds in tobacco. Plant Science, 171 . pp. 138-146.

Fitzpatrick, David A. and McInerney, James O. (2005) Evidence of Positive Darwinian Selection in Omp85, a Highly Conserved Bacterial Outer Membrane Protein Essential for Cell Viability. Journal of Molecular Evolution, 61 (1). pp. 90-98.

Ryan, Jennifer M. and Barry, Frank P. and Murphy, J. Mary and Mahon, Bernard P. (2005) Mesenchymal stem cells avoid allogeneic rejection. Journal of Inflammation, 2 (1).

Bergin, David and Reeves, Emer P. and Renwick, Julie and Wientjes, Frans B. and Kavanagh, Kevin (2005) Superoxide Production in Galleria mellonella Hemocytes: Identification of Proteins Homologous to the NADPH Oxidase Complex of Human Neutrophils. Infection and Immunity, 73 (7).

Reiber, Kathrin and Reeves, Emer P. and Neville, Claire M. and Winkler, Robert and Gebhardt, Peter and Kavanagh, Kevin and Doyle, Sean (2005) The expression of selected non-ribosomal peptide synthetases in Aspergillus fumigatus is controlled by the availability of free iron. FEMS Microbiology Letters, 248 (1). pp. 83-91.

Neville, Claire and Murphy, Alan and Kavanagh, Kevin and Doyle, Sean (2005) A 4'-Phosphopantetheinyl Transferase Mediates Non-Ribosomal Peptide Synthetase Activation in Aspergillus fumigatus. ChemBioChem, 6 (4). pp. 679-685.

Burns, Claire and Geraghty, Rachel and Neville, Claire and Murphy, Alan and Kavanagh, Kevin and Doyle, Sean (2005) Identification, cloning, and functional expression of three glutathione transferase genes from Aspergillus fumigatus. Fungal Genetics and Biology, 42 (4). pp. 319-327.

Abraham, K. and Mielke, H. and Huisinga, W. and Gundert-Remy, U. (2005) Internal Exposure of Children by Simulated Acute Inhalation of Volatile Organic Compounds: The Influence of Chemical Properties on the Child/Adult Concentration Ratio. Basic & Clinical Pharmacology & Toxicology (BCPT), 96 (3). pp. 242-243. ISSN 1742-7843

Abraham, Klaus and Mielke, Hans and Huisinga, Wilhelm and Gundert-Remy, Ursula (2005) Elevated Internal Exposure of Children in Simulated Acute Inhalation of Volatile Organic Compounds: Effects of Concentration and Duration. Archives of Toxicology, 79 (2). pp. 63-73. ISSN 1432-0738

Ennis, Darren P. and Cassidy, Joseph P. and Mahon, Bernard P. (2005) Acellular Pertussis Vaccine Protects against Exacerbation of Allergic Asthma Due to Bordetella pertussis in a Murine Model. Clinical and Diagnostic Laboratory Immunology, 12 . pp. 409-417.

O'Connell, Mary J. and McInerney, James O. (2005) Adaptive evolution of the human fatty acid synthase gene: Support for the cancer selection and fat utilization hypotheses? Gene, 360 (2). pp. 151-159.

Burnell, Ann M. and Houthoofd, Koen and O'Hanlon, Karen and Vanfleteren, Jacques R. (2005) Alternate metabolism during the dauer stage of the nematode Caenorhabditis elegans. Experimental Gerontology, 40 . pp. 850-856.

Griffin, C.T. and Boemare, N.E. and Lewis, E.E. (2005) Biology and Behaviour. Nematodes as Biocontrol Agents .

Jones, Gary W and Tuite, M.F. (2005) Chaperoning prions: the cellular machinery for propagating an infectious protein? BioEssays, 27 . pp. 823-832.

Creevey, C.J. and McInerney, J.O. (2005) Clann: investigating phylogenetic information through supertree analyses. Bioinformatics, 21 (3). pp. 390-392.

Lola-Luz, Theodora and Downes, Martin and Dunne, Richard (2005) Control of Black Vine Weevil larvae Otiorhynchus sulcatus (Fabricius) (Coleoptera:Curculionidae) in grow bags outdoors with nematodes. Agricultural and Forest Entomology, 7 . pp. 121-126.

Goyal, K. and Browne, J.A. and Burnell, A.M. and Tunnacliffe, A. (2005) Dehydration-induced tps gene transcripts from an anhydrobiotic nematode contain novel spliced leaders and encode atypical GT-20 family proteins. Biochimie, 87 . pp. 565-574.

Rolstonc, Alec N. and Griffin, Christine T. and Downes, Martin J. (2005) Distribution of entomopathogenic nematodes in an Irish sand dune system. Nematology, 7 (2). pp. 259-266.

Keane, T.M. and Naughton, T.J. and Travers, S.A.A. and McInerney, J.O. and McCormack, G.P. (2005) DPRml: distributed phylogeny reconstruction by maximum likelihood. Bioinformatics, 21 (7). pp. 969-974.

Enright, Michael R. and Griffin, C. T. (2005) Effects of Paenibacillus nematophilus on the entomopathogenic nematode Heterorhabditis megidis. Journal of Invertebrate Pathology, 88 . pp. 40-48.

O'Gorman, Mary T. and Jatoi, Noor A. and Lane, Stephen J. and Mahon, Bernard P. (2005) IL-1b and TNF-a induce increased expression of CCL28 by airway epithelial cells via an NFjB-dependent pathway. Cellular Immunology, 238 . pp. 87-96.

Corcoran, A. and Doyle, S. and Allain, J.P. and Candotti, D. and Parsyan, A. (2005) Letter to the Editor Evidence of Serological Cross-Reactivity between Genotype 1 and Genotype 3 Erythrovirus Infections. Journal of Virology, 79 (8). pp. 5238-5239.

McCarthy, Elaine and Stack, Colin and Donnelly, Sheila M. and Doyle, Sean and Mann, Victoria H. and Brindley, Paul J. and Stewart, Michael and Day, Tim A. and Maule, Aaron G. and Dalton, John P. (2005) Leucine aminopeptidase of the human blood flukes, Schistosoma mansoni and Schistosoma japonicum. International Journal of Parasitology, 34 (6). pp. 703-714.

McInerney, James O. and Wilkinson, Mark (2005) New methods ring changes for the tree of life. Trends in Ecology and Evolution, 20 (3). pp. 105-107.

Noone, Cariosa M. and Lewis, Ellen A. and Frawley, Anne B. and Newman, Robert W. and Mahon, Bernard P. and Mills, Kingston H. and Johnson, Patricia A. (2005) Novel mechanism of immunosuppression by influenza virus haemagglutinin: selective suppression of interleukin 12 p35 transcription in murine bone marrow-derived dendritic cells. Journal of General Virology, 86 . pp. 1885-1890.

Noone,, Cariosa M. and Lewis, Ellen A. and Frawely, Anne B. and Newman, Robert W. and Mahon, Bernard P. and Mills, Kingston H. and Johnson, Patricia A. (2005) Novel mechanism of immunosuppression by influenza virus haemagglutinin: selective suppression of interleukin 12 p35 transcription in murine bone marrow-derived dendritic cells. Journal of General Virology, 86 . pp. 1885-1890.

Bergin, David and Reeves, Emer P. and Renwick, Julie and Wientjes, Frans B. and Kavanagh, Kevin (2005) Superoxide Production in Galleria mellonella Hemocytes: Identification of Proteins Homologous to the NADPH Oxidase Complex of Human Neutrophils. Infection and Immunity, 73 (7). pp. 4161-4170.

Shannon, Adam J. and Browne, John A. and Boyd, Jacqueline and Fitzpatrick, David A. and Burnell, Ann M. (2005) The anhydrobiotic potential and molecular phylogenetics of species and strains of Panagrolaimus (Nematoda, Panagrolaimidae). Journal of Experimental Biology, 208 . pp. 2433-2445.

Philip, Gayle K. and Creevey, Christopher J. and McInerney, James O. (2005) The Opisthokonta and the Ecdysozoa May Not Be Clades: Stronger Support for the Grouping of Plant and Animal than for Animal and Fungi and Stronger Support for the Coelomata than Ecdysozoa. Molecular Biology and Evolution, 22 . pp. 1175-1184.

Ennis, Darren P. and Cassidy, Joseph P. and Mahona, Bernard P. (2005) Whole-cell pertussis vaccine protects against Bordetella pertussis exacerbation of allergic asthma. Immunology Letters, 97 . pp. 91-100.

Mahon, Dr. Bernard and Flynn, Dr. Marion A. and Casey, Dr. David G. and Todryk, Dr. Stephen M. (2004) Efficient delivery of small interfering RNA for inhibition of IL-12p40 expression in vivo. Journal of Inflammation, 1 (4). pp. 1-12.

Mahon, Dr. Bernard and Ennisa, Dr. Darren and Cassidy, Dr. Joseph (2004) Whole-cell pertussis vaccine protects against Bordetella pertussis exacerbation of allergic asthma. Immunology Letters, xxx . pp. 1-10.

Browne, John A. and Dolan, Katharine M. and Tyson, Trevor and Goyal, Kshamata and Tunnacliffe, Alan and Burnell, Ann M. (2004) Dehydration-Specific Induction of Hydrophilic Protein Genes in the Anhydrobiotic Nematode Aphelenchus avenae. Eukaryotic Cell, 3 (4). pp. 966-975.

Coyle, Barry and Kinsella, Paula and McCann, Malachy and Devereux, Michael and O'Connor, Robert and Clynes, Martin and Kavanagh, Kevin (2004) Induction of apoptosis in yeast and mammalian cells by exposure to 1,10-phenanthroline metal complexes. Toxicology in Vitro, 18 (1). pp. 63-70.

Doyle, Dr. Sean and Corcoran, Dr. Amanda (2004) Advances in the biology, diagnosis and host-pathogen interactions of parvovirus B19. Journal of Medical Microbiology, 53 . pp. 1-17.

Reeves, Emer P and Murphy, Thomas and Daly, Paul and Kavanagh, Kevin (2004) Amphotericin B enhances the synthesis and release of the immunosuppressive agent gliotoxin from the pulmonary pathogen Aspergillus fumigatus. Journal of Medical Microbiology, 53 . pp. 1-7.

Casey, Orla M. and Fitzpatrick, Richard and McInerney, James O. and Morris, Dermot G. and Powell, Richard and Sreenan, Joseph M. (2004) Analysis of gene expression in the bovine corpus luteum through generation and characterisation of 960 ESTs. Biochimica et Biophysica Acta, 1679 (1). pp. 10-17.

Mahon, Bernard and Doyle, Sean and Corcoran, Amanda (2004) B Cell Memory is directed toward conformational epitopes of parvovirus B19 capsid proteins and the unique region of VP1. The Journal of Infectious Diseases, 189 . pp. 1873-80.

Corcoran, Amanda and Mahon, Bernard P. and Doyle, Sean (2004) B Cell Memory Is Directed toward Conformational Epitopes of Parvovirus B19 Capsid Proteins and the Unique Region of VP1. Journal of Infectious Diseases, 189 (10). pp. 1873-1880.

Lynn, David J. and Higgs, Rowan and Gaines, Susan and Tierney, Joanna and James, Tharappel and Lloyd, Andrew T. and Fares, Mario A. and Mulcahy, Grace and O'Farrelly, Cliona (2004) Bioinformatic discovery and initial characterisation of nine novel antimicrobial peptide genes in the chicken. Immunogenetics, 56 (3). pp. 170-176.

Collins, Peter R. and Stack, Colin M. and O'Neill, Sandra M. and Doyle, Sean and Ryan, Thecla and Brennan, Gerard P. and Mousley, Angela and Stewart, Michael and Maule, Aaron G. and Dalton, John P. and Donnelly, Sheila (2004) Cathepsin L1, the Major Protease Involved in Liver Fluke (Fasciola hepatica) Virulence. Journal of Biological Chemistry, 279 (17). pp. 17038-17046.

Burnell, Ann M. and O'Halloran, Damien M. (2004) Chemoreceptor genes: what can we learn from Caenorhabditis elegans and how can we apply this information to studies on other nematodes? Nematology Monographs & Perspectives, 2 . pp. 707-714.

Garland, M.R. and Lavelle, E and Doherty, D and Golden-Mason, L. and Fitzpatrick, P and Hill, A and Walsh, N and O'Farrelly, C (2004) Cortisol does not mediate the suppressive effects of psychiatric morbidity on natural killer cell activity: a cross-sectional study of patients with early breast cancer. Psychological Medicine, 34 (3). pp. 481-490.

Doyle, Sean and Fox, M. and Gray, G. and Kavanagh, K. (2004) Detection of Aspergillus fumigatus mycotoxins: immunogen synthesis and immunoassay development. Journal of Microbiological Methods, 56 . pp. 221-230.

Kenna, Tony and Golden-Mason, Lucy and Norris, Suzanne and Hegarty, John E. and O'Farrelly, Cliona and Doherty, Derek G. (2004) Distinct subpopulations of gy T cells are present in normal and tumor-bearing human liv. Clinical Immunology, 113 (1). pp. 56-63.

O'Keeffe, Joan and Doherty, Derek G. and Kenna, Tony and Sheahan, Kieran and O'Donoghue, Diarmuid P. and Hyland, John M. and O'Farrelly, Cliona (2004) Diverse populations of T cells with NK cell receptors accumulate in the human intestine in health and in colorectal cancer. European Journal of Immunology, 34 . pp. 2110-2119.

Creevey, Christopher J. and Fitzpatrick, David A. and Philip, Gayle K. and Kinsella, Rhoda J. and O'Connell, Mary J. and Pentony, Melissa M. and Travers, Simon A. and Wilkinson, Mark and McInerney, James O. (2004) Does a tree-like phylogeny only exist at the tips in the prokaryotes? Proceedings of The Royal Society of London, Biology Series, 271 (1557). pp. 2551-2558.

Flynn, Marion A and Casey, David G and Todryk, Stephen M and Mahon, Bernard P (2004) Efficient delivery of small interfering RNA for inhibition of IL-12p40 expression in vivo. Journal of Inflammation, 1 (4). pp. 1-12.

Lynn, David J. and Lloyd, Andrew T. and Fares, Mario A. and O'Farrelly, Cliona (2004) Evidence of Positively Selected Sites in Mammalian a-Defensins. Molecular Biology and Evolution, 21 (5). pp. 819-827.

Kavanagh, Kevin and Reeves, Emer P (2004) Exploiting the potential of Insects for in vivo pathogenicity testing of Microbial pathogen. FEMS Microbiology Reviews, 28 . pp. 101-112.

Mahony, Shaun and McInerney, James O and Smith, Terry J and Golden, Aaron (2004) Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models. BMC Bioinformatics, 5 (1). p. 23.

Carr, Michael J. and McCormack, Grace P. and Crowley, Brendan (2004) Genetic Variation in Clinical Varicella-Zoster Virus Isolates Collected in Ireland Between 2002 and 2003. Journal of Medical Virology, 73 (1). pp. 131-136.

Fares, Mario Ali and Moya, Andre´s and Barrio, Eladio (2004) GroEL and the maintenance of bacterial endosymbiosis. Trends in Genetics, 20 (9). pp. 413-416.

Kavanagh, Kevin and Dowd, Susan (2004) Histatins: antimicrobial peptides with therapeutic potential. Journal of Pharmacy and Pharmacology, 56 .

Kelly, Anna M. and Golden-Mason, Lucy and McEntee, Gerry and Traynor, Oscar and Doherty, Derek G. and Hegarty, John E. and O'Farrelly, Cliona (2004) Interleukin 12 (IL-12) is increased in tumour bearing human liver and expands CD8C and CD56C T cells in vitro but not in vivo. Cytokine, 25 . pp. 273-282.

Eshwika, Ahmed and Coyle, Barry and Devereux, Michael and McCann, Malachy and Kavanagh, Kevin (2004) Metal complexes of 1,10-phenanthroline-5,6-dione alter the susceptibility of the yeast Candida albicans to Amphotericin B and Miconazole. Biometals, 17 . pp. 415-422.

Stock, S. Patricia and Griffin, Christine T. and Chaerani, Rani (2004) Morphological and molecular characterisation of Steinernema hermaphroditum n. sp. (Nematoda: Steinernematidae), an entomopathogenic nematode from Indonesia, and its phylogenetic relationships with other members of the genus. Nematology, 6 . pp. 401-412.

Kenis, M. and Wegensteiner, R. and Griffin, C.T. (2004) Parasitoids, predators, nematodes and pathogens associated with bark weevil pests in Europe. In: UNSPECIFIED Kluwer Academic Publishers, pp. 395-414.

Mahon, Dr. Bernard and Ennis, Dr. D.P. and Cassidy, Dr. J.P. (2004) Prior Bordetella pertussis infection modulates allergen priming and the severity of airway pathology in a murine model of allergic asthma. Journal of Clinical and Experimental Allergy .

Ennis, D.P. and Cassidy, J.P. and Mahon, B.P. (2004) Prior Bordetella pertussis infection modulates allergen priming and the severity of airway pathology in a murine model of allergic asthma. Clinical and Experimental Allergy, 34 . pp. 1488-1497.

Jones, Gary and Song, Youtao and Chung, Seyung and Masison, Daniel C. (2004) Propagation of Saccharomyces cerevisiae [PSI] Prion Is Impaired by Factors That Regulate Hsp70 Substrate Binding. Molecular and Cellular Biology, 24 (9). pp. 3928-3937.

Wilkinson, Mark and Thorley, Joseph L. and Pisani, David E. and Lapointe, Francois-Joseph and McInerney, James O. (2004) Some Desiderata for Liberal Supertrees. In: UNSPECIFIED Kluwer Academic Publishers, p. 564.

Enright, M.R. and Griffin, C.T. (2004) Specificity of Association between Paenibacillus spp. and the Entomopathogenic Nematodes, Heterorhabditis spp. Microbial Ecology, 48 . pp. 412-421.

Fitters, Paul F.L. and Griffin, Christine T. (2004) Spontaneous and induced activity of Heterorhabditis megidis infective juveniles during storage. Nematology, 6 . pp. 911-917.

Fares, Mario A (2004) SWAPSC: sliding window analysis procedure to detect selective constraints. Bioinformatics, 20 (16). pp. 2867-2868.

Abuskhuna, A. and Briody, J.M. and McCann, M. and Devereux, M. and Kavanagh, K.A. and Fontecha, J.B. and McKee, V. (2004) Synthesis, structure and anti-fungal activity of dimeric Ag(I) complexes containing bis-imidazole ligands. Polyhedron, 23 . pp. 1249-1255.

McCann, Malachy and Coyle, Barry and Kavanagh, Kevin and McKee, Vickie and Kayal, Nijhuma and Egan, Denise and Deegan, Carol Deegan and Finn, Gregory J. and Devereux, Michael (2004) Synthesis, X-ray crystal structure, anti-fungal and anti-cancer activity of [Ag2(NH3)2(salH)2] (salH2 ¼salicylic acid). Journal of Inorganic Biochemistry, 98 . pp. 1361-1366.

Travers, Simon A. A. and Clewley, Jonathan P. and Glynn, Judith R. and Fine, Paul E. M. and Crampin, Amelia C. and Sibande, Felix and Mulawa, Dominic and McInerney, James O. and McCormack, Grace P. (2004) Timing and Reconstruction of the Most Recent Common Ancestor of the Subtype C Clade of Human Immunodeficiency Virus Type 1. Journal of Virology, 78 (19). pp. 10501-10506.

Ennisa, Darren P and Cassidy, Joseph P and Mahon, Bernard P (2004) Whole-cell pertussis vaccine protects against Bordetella pertussis exacerbation of allergic asthma. Immunology Letters, 97 (1). pp. 91-100.

O'Keeffe, Joseph and Doyle, Sean and Kavanagh, Kevin (2003) Exposure of the yeast Candida albicans to the anti-neoplastic agent adriamycin increases the tolerance to amphotericin B. Journal of Pharmacy and Pharmacology, 55 (12). pp. 1629-1633.

Mahon, Dr. Bernard and Flynn, Dr. Marion (2003) Cell Mediated and Humoral Immune responses to Mumps Virus: Recent Developments. Recent Research Developments in Virology, 5 . pp. 97-115.

Goyal, Kshamata and Tisi, Laurence and Basran, Amrik and Browne, John and Burnell, Ann and Zurdo, Jesus and Tunnacliffe, Alan (2003) Transition from Natively Unfolded to Folded State Induced by Desiccation in an Anhydrobiotic Nematode Protein. The Journal of Biological Chemistry, 278 (15). pp. 12977-12984.

Geraghty, Patrick and Kavanagh, Kevin (2003) Erythromycin, an inhibitor of mitoribosomal protein biosynthesis, alters the amphotericin B susceptibility of Candida albicans. Journal of Pharmacy and Pharmacology, 55 (2). pp. 179-184.

Mahon, Dr. Bernard and Corcoran, Dr. Amanda and McParland, Dr. Peter and Davoren, Dr. Anne and Doyle, Dr. Sean (2003) Ex Vivo Cytokine responses against Parvovirus B19 Antigens in previously infected pregnant women. Journal of Medial Virology, 70 . pp. 475-480.

Doyle, Dr. Sean and Daly, Dr. P. (2003) The development of a competitive PCR-ELISA for the detection of equine herpesvirus-1. Journal of Virological Methods, 107 . pp. 237-244.

Doyle, Sean and Mahon, Bernard and Corcoran, A. and Daly, P. (2002) High-Sensitivity PCR Detection of Parvovirus B19 Plasma. Journal of Clinical Microbiology, 40 (6). pp. 1958-1962.

Browne, John and Tunnacliffe, Alan and Burnell, Ann (2002) Plant desiccation gene found in a nematode. Nature, 416 . p. 38.

Dolan, K.M. and Jones, J.T. and Burnell, A.M. (2002) Detection of changes occurring during recovery from the dauer stage in Heterorhabditis bacteriophora. Parasitology, 125 . pp. 71-81.

Stock, Patricia and Griffin, Christine T. and Burnell, Ann M. (2002) Morphological characterisation of three isolates of Heterorhabditis Poinar, 1976 from the "Irish group" (Nematoda: Rhabditida: Heterorhabditidae)and additional evidence supporting their recognition as a distinct species, H. downesi n. sp. Systematic Parasitology, 51 . pp. 95-106.

Doyle, Dr. Sean and Daly, Dr. P. and Collier, Dr. T. (2002) PCR-ELISA detection of Escherichia coli in milk. Letters in Applied Microbiology, 34 . pp. 222-226.

Mahon, Dr. Bernard and Doyle, Dr. Sean and Kavanagh, Dr. Kevin and Corcoran, Dr. A. and Ennis, Dr. O. (2001) Baculovirus expression of parvovirus B19 (B19V) NS1: utility in confirming recent infection. Journal of Clinical Virology, 22 . pp. 55-60.

Casey, D.G. and Burnell, A.M. (2001) The isolation of microsatellite loci in the Mediterranean fruitfly Ceratitis capitata (Diptera: Tephritidae) using a biotin/streptavidin enrichment technique. Molecular Ecology Notes, 1 . pp. 120-122.

Burnell, Ann M. and Stock, S. Patricia (2000) Heterorhabditis, Steinernema and their bacterial symbionts - lethal pathogens of insects. Nematology, 2 (1). pp. 31-42.

Stack, Colin M. and Easwaramoorthy, Subbana G. and Metha, Usha K. and Downes, Martin J. and Griffin, Christine T. and Burnell, Ann M. (2000) Molecular characterisation of Heterorhabditis indica isolates from India, Kenya, Indonesia and Cuba. Nematology, 2 (5). pp. 477-487.

Mahon, Dr. Bernard and Brady, Dr. Miriam and Mills, Prof. Kingston (2000) Protection against Bordetella pertussis in mice in the absence of detectable circulating antibody: implications for long-term immunity in children. The Journal of Infectious Diseases, 181 . pp. 2087-2091.

Mahon, Bernard (2000) The Irish Society for Immunology. Immunology Letters, 73 .

Mahon, Dr. Bernard and Mills, Prof. Kingston (1999) Interferon-g mediated immune effector mechanisms against Bordetella pertussis. Immunology Letters, 68 . pp. 213-217.

Griffin, Christine T. and Dix, Ilona and Joyce, Susan A. and Burnell, Ann M. and Downes, Martin J. (1999) Isolation and characterisation of Heterorhabditis spp. (Nematoda: Heterorhabditidae) from Hungary, Estonia and Denmark. Nematology, 1 (3). pp. 321-332.

Mills, Kingston and Ryan, Mark and McGuirk, Peter and Griffin, Fiona and Murphy, Geraldine and Mahon, Bernard (1999) The Immunology of Bordetella pertussis Infection. Biologicals, 27 . p. 77.

Adams, B.J. and Burnell, A.M. and Powers, T.O. (1998) A Phylogenetic Analysis of Heterorhabditis (Nemata :Rhabditidae) Based on Internal Transcribed Spacer 1 DNA Sequence Data. Journal of Nematology, 30 (1). pp. 22-39.

O'Leary, Sean A. and Stack, Colin M. and Chubb, Michelle A. and Burnell, Ann M. (1998) The effect of day of emergence from the insect cadaver on the behaviour and environmental tolerances of infective juveniles of the entomopathogenic nematode Heterorhabditis Megidis (Strain UK211). Journal of Parasitology, 84 (4). pp. 665-672.

Nugent, Miriam J. and O'Leary, Sean A. and Burnell, Ann M. (1996) Optimised procedures for the cryopreservation of different species of Heterorhabditis. Fundalmental Applied Nematology, 19 (1). pp. 1-6.

Burnell, Ann M. and Dowds, Barbara C.A. (1996) The Genetic Improvement of Entomopathogenic Nematodes and Their Symbiont Bacteria: Phenotypic Targets, Genetic Limitations and an Assessment of Possible Hazards. Biocontrol Science and Technology, 6 . pp. 435-447.

Griffin, Christine T. and Joyce, Susan A. and Dix, Ilona and Burnell, Ann M. and Downes, Martin J. (1994) Characterisation of the entomopathogenic nematode Heterorhabditk (Nematoda : Heterorhabditidae) from Ireland and Britain by molecular and cross-breeding techniques,and the occurrence of the genus in these islands. Fundalmental Applied Nematology, 17 (3). pp. 245-253.

Joyce, Susan A. and Burnell, Ann M. and Powers, Thomas O. (1994) Characterization of Heferorhabdifis Isolates by PCR Amplification of Segments of mtDNA and rDNA Genes'. Journal of Nematology, 26 (3). pp. 260-270.

Dix, I. and Burnell, A.M. and Griffin, C.T. and Joyce, S.A. and Nugent, M.J. (1992) The identification of biological species in the genus Heterorhabditis (Nematoda : Heterorhabditidae) by cross-breeding second-generation amphimictic adults. Parasitology, 104 . pp. 509-518.